IL_8V9K_160

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_160 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.1033

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8V9K|1|a|G|754
8V9K|1|a|G|755
8V9K|1|a|G|756
8V9K|1|a|A|757
8V9K|1|a|G|758
*
8V9K|1|a|U|784
8V9K|1|a|C|785

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain C

50S ribosomal protein L2

Chain k

30S ribosomal protein S11