IL_8V9K_166

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_166 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1497

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8V9K|1|a|G|909
8V9K|1|a|G|910
8V9K|1|a|G|911
*
8V9K|1|a|C|1371
8V9K|1|a|C|1372
8V9K|1|a|U|1373

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5