IL_8V9K_187
3D structure
- PDB id
- 8V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9K_187 not in the Motif Atlas
- Geometric match to IL_5J7L_009
- Geometric discrepancy: 0.243
- The information below is about IL_5J7L_009
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
8V9K|1|a|C|1390
8V9K|1|a|A|1391
8V9K|1|a|C|1392
*
8V9K|1|a|G|1475
8V9K|1|a|A|1476
8V9K|1|a|A|1477
8V9K|1|a|G|1478
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain u
- 30S Ribosomal Protein S22
- Chain z
- Ribosome hibernation factor Balon (Rv2629)
Coloring options: