IL_8V9L_179
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCUG*CGAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8V9L|1|a|U|1238, 8V9L|1|a|A|1261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9L_179 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.2776
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8V9L|1|a|G|1236
8V9L|1|a|C|1237
8V9L|1|a|U|1238
8V9L|1|a|G|1239
*
8V9L|1|a|C|1258
8V9L|1|a|G|1259
8V9L|1|a|A|1260
8V9L|1|a|A|1261
8V9L|1|a|U|1262
8V9L|1|a|C|1263
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S10
- Chain n
- Small ribosomal subunit protein uS14B
Coloring options: