IL_8VFT_004

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_004 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.0975

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VFT|1|5|G|16
8VFT|1|5|A|17
8VFT|1|5|C|18
*
8VFT|1|8|G|139
8VFT|1|8|C|140
8VFT|1|8|C|141

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain N

eL15

Chain X

uL23

Chain h

uL29