IL_8VFT_040

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8VFT|1|5|C|1214, 8VFT|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_040 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.2833

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VFT|1|5|C|1082
8VFT|1|5|U|1083
8VFT|1|5|C|1084
*
8VFT|1|5|G|1213
8VFT|1|5|C|1214
8VFT|1|5|C|1215
8VFT|1|5|C|1216
8VFT|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30