IL_8VFT_053
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8VFT|1|5|A|1650, 8VFT|1|5|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_053 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.1057
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VFT|1|5|OMG|1522
8VFT|1|5|A|1523
8VFT|1|5|A2M|1524
8VFT|1|5|A|1525
8VFT|1|5|G|1526
*
8VFT|1|5|C|1648
8VFT|1|5|U|1649
8VFT|1|5|A|1650
8VFT|1|5|G|1651
8VFT|1|5|U|1652
8VFT|1|5|A|1653
8VFT|1|5|G|1654
8VFT|1|5|C|1655
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain j
- eL37
Coloring options: