IL_8VFT_055

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_055 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1401

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8VFT|1|5|C|1551
8VFT|1|5|G|1552
8VFT|1|5|A|1553
8VFT|1|5|A|1554
8VFT|1|5|G|1555
*
8VFT|1|5|U|1572
8VFT|1|5|G|1573
8VFT|1|5|G|1574
8VFT|1|5|A|1575
8VFT|1|5|G|1576

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

eL43