IL_8VFT_063
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGUAA*(PSU)AAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_063 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.1817
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VFT|1|5|C|1732
8VFT|1|5|G|1733
8VFT|1|5|G|1734
8VFT|1|5|U|1735
8VFT|1|5|A|1736
8VFT|1|5|A|1737
*
8VFT|1|5|PSU|1792
8VFT|1|5|A|1793
8VFT|1|5|A|1794
8VFT|1|5|A|1795
8VFT|1|5|U|1796
8VFT|1|5|G|1797
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- uL18
- Chain F
- uL30
- Chain I
- uL16
- Chain S
- eL20
- Chain T
- eL21
Coloring options: