IL_8VFT_077
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8VFT|1|5|C|1935, 8VFT|1|5|A|2041, 8VFT|1|5|U|2044, 8VFT|1|5|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_077 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.178
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VFT|1|5|G|1933
8VFT|1|5|A|1934
8VFT|1|5|C|1935
8VFT|1|5|C|1936
8VFT|1|5|C|1937
8VFT|1|5|C|1938
8VFT|1|5|A|1939
8VFT|1|5|G|1940
8VFT|1|5|A|1941
8VFT|1|5|A|1942
8VFT|1|5|A|1943
8VFT|1|5|A|1944
*
8VFT|1|5|U|2038
8VFT|1|5|G|2039
8VFT|1|5|A|2040
8VFT|1|5|A|2041
8VFT|1|5|A|2042
8VFT|1|5|A|2043
8VFT|1|5|U|2044
8VFT|1|5|G|2045
8VFT|1|5|G|2046
8VFT|1|5|A|2047
8VFT|1|5|U|2048
8VFT|1|5|G|2049
8VFT|1|5|G|2050
8VFT|1|5|C|2051
8VFT|1|5|G|2052
8VFT|1|5|C|2053
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- uL3
- Chain F
- uL30
- Chain I
- uL16
- Chain O
- uL13
- Chain S
- eL20
- Chain f
- eL33
- Chain m
- eL40
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