IL_8VFT_084
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8VFT|1|5|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_084 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.132
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8VFT|1|5|C|2302
8VFT|1|5|C|2303
8VFT|1|5|U|2304
8VFT|1|5|U|2305
8VFT|1|5|G|2306
8VFT|1|5|A|2307
8VFT|1|5|A|2308
8VFT|1|5|G|2309
*
8VFT|1|5|U|2329
8VFT|1|5|G|2330
8VFT|1|5|G|2331
8VFT|1|5|A|2332
8VFT|1|5|G|2333
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain Y
- uL24
- Chain e
- eL32
Coloring options: