IL_8VFT_115

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

8VFT|1|5|A2M|3785, 8VFT|1|5|C|3791, 8VFT|1|5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_115 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.3056

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8VFT|1|5|C|3781
8VFT|1|5|5MC|3782
8VFT|1|5|A|3783
8VFT|1|5|A|3784
8VFT|1|5|A2M|3785
8VFT|1|5|U|3786
8VFT|1|5|G|3787
8VFT|1|5|C|3788
8VFT|1|5|C|3789
8VFT|1|5|U|3790
8VFT|1|5|C|3791
8VFT|1|5|OMG|3792
*
8VFT|1|5|OMC|3808
8VFT|1|5|G|3809
8VFT|1|5|C|3810
8VFT|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41