IL_8VFT_138

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|5|C|4466
8VFT|1|5|A|4467
8VFT|1|5|U|4468
8VFT|1|5|U|4469
8VFT|1|5|G|4470
*
8VFT|1|5|C|4485
8VFT|1|5|C|4486
8VFT|1|5|A|4487
8VFT|1|5|A|4488
8VFT|1|5|G|4489
8VFT|1|5|C|4490
8VFT|1|5|G|4491

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain H

uL6

Chain O

uL13

Chain V

uL14

Chain m

eL40