IL_8VFT_142

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8VFT|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_142 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.1488

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VFT|1|5|C|4582
8VFT|1|5|C|4583
8VFT|1|5|A|4584
8VFT|1|5|U|4585
*
8VFT|1|5|A|4717
8VFT|1|5|G|4718
8VFT|1|5|G|4719
8VFT|1|5|C|4720
8VFT|1|5|G|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13