IL_8VFT_153

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

8VFT|1|5|C|4772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_153 not in the Motif Atlas

Geometric match to IL_2OE5_002

Geometric discrepancy: 0.2625

The information below is about IL_2OE5_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

8VFT|1|5|G|4769
8VFT|1|5|U|4770
8VFT|1|5|C|4771
8VFT|1|5|C|4772
8VFT|1|5|C|4773
*
8VFT|1|5|G|4862
8VFT|1|5|G|4863
8VFT|1|5|U|4864
8VFT|1|5|C|4865

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13