IL_8VFT_154

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_154 not in the Motif Atlas

Geometric match to IL_4K27_002

Geometric discrepancy: 0.205

The information below is about IL_4K27_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VFT|1|5|U|4885
8VFT|1|5|C|4886
8VFT|1|5|C|4887
8VFT|1|5|C|4888
*
8VFT|1|5|G|4931
8VFT|1|5|U|4932
8VFT|1|5|C|4933
8VFT|1|5|A|4934

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain M

eL14