IL_8VFT_180

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUAAC*GCUAAUA(OMC)

Length

15 nucleotides

Bulged bases

8VFT|1|9|U|172

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_180 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1279

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8VFT|1|9|G|145
8VFT|1|9|G|146
8VFT|1|9|A|147
8VFT|1|9|U|148
8VFT|1|9|A|149
8VFT|1|9|A|150
8VFT|1|9|C|151
*
8VFT|1|9|G|167
8VFT|1|9|C|168
8VFT|1|9|U|169
8VFT|1|9|A|170
8VFT|1|9|A|171
8VFT|1|9|U|172
8VFT|1|9|A|173
8VFT|1|9|OMC|174

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain YY

eS24