IL_8VFT_207

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_207 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.1364

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VFT|1|9|G|874
8VFT|1|9|A|875
8VFT|1|9|C|876
*
8VFT|1|9|G|910
8VFT|1|9|C|911
8VFT|1|9|C|912

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

eS7

Chain LL

uS17

Chain R

eL19