IL_8VFT_214

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8VFT|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_214 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1622

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8VFT|1|9|G|952
8VFT|1|9|C|953
8VFT|1|9|U|954
8VFT|1|9|A|955
8VFT|1|9|G|956
*
8VFT|1|9|C|967
8VFT|1|9|U|968
8VFT|1|9|U|969
8VFT|1|9|G|970
8VFT|1|9|G|971
8VFT|1|9|A|972
8VFT|1|9|C|973
8VFT|1|9|C|974

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

eS1

Chain OO

uS11