IL_8VFT_224

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_224 not in the Motif Atlas

Homologous match to IL_8C3A_450

Geometric discrepancy: 0.1663

The information below is about IL_8C3A_450

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8VFT|1|9|C|1230
8VFT|1|9|C|1231
8VFT|1|9|U|1232
*
8VFT|1|9|G|1526
8VFT|1|9|C|1527
8VFT|1|9|G|1528

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain QQ

uS9

Chain SS

uS13

Chain TT

eS19

Chain UU

uS10