IL_8VFT_225

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_225 not in the Motif Atlas

Homologous match to IL_8C3A_451

Geometric discrepancy: 0.2248

The information below is about IL_8C3A_451

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

8VFT|1|9|G|1235
8VFT|1|9|G|1236
*
8VFT|1|9|C|1521
8VFT|1|9|A|1522
8VFT|1|9|C|1523

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 3

Transfer RNA; tRNA

Chain PP

uS19

Chain SS

uS13