IL_8VFT_235

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*(5MC)G

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_235 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.1866

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8VFT|1|9|C|1363
8VFT|1|9|U|1364
8VFT|1|9|G|1365
*
8VFT|1|9|5MC|1374
8VFT|1|9|G|1375

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain RR

eS17

Chain aa

eS26