IL_8VFT_236
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 8VFT|1|9|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VFT_236 not in the Motif Atlas
- Geometric match to IL_8P9A_419
- Geometric discrepancy: 0.3393
- The information below is about IL_8P9A_419
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8VFT|1|9|C|1395
8VFT|1|9|A|1396
8VFT|1|9|U|1397
8VFT|1|9|G|1398
8VFT|1|9|C|1399
*
8VFT|1|9|G|1447
8VFT|1|9|A|1448
8VFT|1|9|G|1449
8VFT|1|9|G|1450
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain QQ
- uS9
- Chain RR
- eS17
- Chain UU
- uS10
- Chain gg
- RACK1
Coloring options: