IL_8VFT_247

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CG(OMC)U*AAAAG

Length

9 nucleotides

Bulged bases

8VFT|1|9|A|1825

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_247 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.3452

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

8VFT|1|9|C|1708
8VFT|1|9|G|1709
8VFT|1|9|OMC|1710
8VFT|1|9|U|1711
*
8VFT|1|9|A|1822
8VFT|1|9|A|1823
8VFT|1|9|A|1824
8VFT|1|9|A|1825
8VFT|1|9|G|1826

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain XX

uS12

Chain n

eL41

Chain v

eEF2

Chain w

mRNA