IL_8VIO_036
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8VIO|1|A|A|1275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_036 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.1118
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8VIO|1|A|C|1116
8VIO|1|A|U|1117
8VIO|1|A|A|1118
8VIO|1|A|A|1119
8VIO|1|A|G|1120
*
8VIO|1|A|C|1272
8VIO|1|A|G|1273
8VIO|1|A|A|1274
8VIO|1|A|A|1275
8VIO|1|A|G|1276
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 3
- 50S Ribosomal Protein L37
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain R
- 50S Ribosomal Protein L20
- Chain S
- 50S Ribosomal Protein L21
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