IL_8VIO_108

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UUGAG*CAAGACCAG

Length

14 nucleotides

Bulged bases

8VIO|1|A|C|3004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_108 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1994

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8VIO|1|A|U|2860
8VIO|1|A|U|2861
8VIO|1|A|G|2862
8VIO|1|A|A|2863
8VIO|1|A|G|2864
*
8VIO|1|A|C|2998
8VIO|1|A|A|2999
8VIO|1|A|A|3000
8VIO|1|A|G|3001
8VIO|1|A|A|3002
8VIO|1|A|C|3003
8VIO|1|A|C|3004
8VIO|1|A|A|3005
8VIO|1|A|G|3006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S Ribosomal Protein L13