IL_8VIO_175

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_175 not in the Motif Atlas

Homologous match to IL_4LFB_049

Geometric discrepancy: 0.395

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

8VIO|1|a|C|1109
8VIO|1|a|A|1110
8VIO|1|a|G|1111
8VIO|1|a|C|1112
*
8VIO|1|a|G|1123
8VIO|1|a|G|1124

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S9