IL_8VIO_179
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GCUG*CGAAUCC
- Length
- 11 nucleotides
- Bulged bases
- 8VIO|1|a|U|1238, 8VIO|1|a|A|1261, 8VIO|1|a|U|1262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_179 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.4715
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VIO|1|a|G|1236
8VIO|1|a|C|1237
8VIO|1|a|U|1238
8VIO|1|a|G|1239
*
8VIO|1|a|C|1258
8VIO|1|a|G|1259
8VIO|1|a|A|1260
8VIO|1|a|A|1261
8VIO|1|a|U|1262
8VIO|1|a|C|1263
8VIO|1|a|C|1264
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S3
- Chain p
- 30S ribosomal protein S10
- Chain u
- 30S Ribosomal Protein S14
Coloring options: