IL_8VIO_188
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_188 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.206
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VIO|1|a|C|1413
8VIO|1|a|C|1414
8VIO|1|a|G|1415
8VIO|1|a|A|1416
8VIO|1|a|A|1417
8VIO|1|a|G|1418
*
8VIO|1|a|C|1450
8VIO|1|a|G|1451
8VIO|1|a|A|1452
8VIO|1|a|A|1453
8VIO|1|a|G|1454
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L19
- Chain z
- 30S ribosomal protein S20
Coloring options: