IL_8VK7_020

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8VK7|1|A|G|916, 8VK7|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_020 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1532

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8VK7|1|A|G|789
8VK7|1|A|A|790
8VK7|1|A|A|791
8VK7|1|A|G|792
8VK7|1|A|C|793
*
8VK7|1|A|G|914
8VK7|1|A|U|915
8VK7|1|A|G|916
8VK7|1|A|A|917
8VK7|1|A|U|918
8VK7|1|A|A|919
8VK7|1|A|G|920
8VK7|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15