IL_8VK7_025
3D structure
- PDB id
- 8VK7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8VK7|1|A|G|891, 8VK7|1|A|A|903, 8VK7|1|A|A|904, 8VK7|1|A|U|905
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VK7_025 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1124
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VK7|1|A|G|890
8VK7|1|A|G|891
8VK7|1|A|G|892
*
8VK7|1|A|C|902
8VK7|1|A|A|903
8VK7|1|A|A|904
8VK7|1|A|U|905
8VK7|1|A|C|906
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S Ribosomal Protein L4
- Chain T
- 50S Ribosomal Protein L22
- Chain d
- 50S ribosomal protein L34
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