IL_8VK7_058

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

8VK7|1|A|U|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_058 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.3562

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_04785.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8VK7|1|A|G|1653
8VK7|1|A|G|1654
8VK7|1|A|A|1655
8VK7|1|A|A|1656
*
8VK7|1|A|U|1777
8VK7|1|A|A|1778
8VK7|1|A|U|1779
8VK7|1|A|G|1780
8VK7|1|A|C|1781

Current chains

Chain A

23S ribosomal RNA

Nearby chains