IL_8VK7_060

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8VK7|1|A|U|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_060 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2779

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VK7|1|A|U|1689
8VK7|1|A|A|1690
8VK7|1|A|A|1691
8VK7|1|A|G|1692
*
8VK7|1|A|U|1742
8VK7|1|A|G|1743
8VK7|1|A|A|1744
8VK7|1|A|U|1745
8VK7|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains