IL_8VK7_076

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8VK7|1|A|C|2279, 8VK7|1|A|U|2837, 8VK7|1|A|A|2838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_076 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1324

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

8VK7|1|A|A|2278
8VK7|1|A|C|2279
8VK7|1|A|G|2280
*
8VK7|1|A|C|2836
8VK7|1|A|U|2837
8VK7|1|A|A|2838
8VK7|1|A|U|2839

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain T

50S Ribosomal Protein L22

Chain b

50S ribosomal protein L32