IL_8VK7_082

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

8VK7|1|A|G|2348, 8VK7|1|A|U|2395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_082 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.5916

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8VK7|1|A|G|2347
8VK7|1|A|G|2348
8VK7|1|A|A|2349
8VK7|1|A|G|2350
8VK7|1|A|A|2351
*
8VK7|1|A|U|2383
8VK7|1|A|C|2384
8VK7|1|A|G|2385
8VK7|1|A|U|2386
8VK7|1|A|U|2387
8VK7|1|A|G|2388
8VK7|1|A|U|2389
8VK7|1|A|U|2390
8VK7|1|A|G|2391
8VK7|1|A|A|2392
8VK7|1|A|A|2393
8VK7|1|A|A|2394
8VK7|1|A|U|2395
8VK7|1|A|A|2396
8VK7|1|A|C|2397

Current chains

Chain A

23S ribosomal RNA

Nearby chains