IL_8VK7_093

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_093 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1329

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8VK7|1|A|C|2690
8VK7|1|A|C|2691
8VK7|1|A|A|2692
8VK7|1|A|A|2693
8VK7|1|A|G|2694
*
8VK7|1|A|C|2704
8VK7|1|A|G|2705
8VK7|1|A|A|2706
8VK7|1|A|C|2707
8VK7|1|A|G|2708

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain N

Large ribosomal subunit protein uL16

Chain f

50S ribosomal protein L36