IL_8VK7_100

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VK7_100 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1176

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VK7|1|A|C|2876
8VK7|1|A|U|2877
8VK7|1|A|A|2878
8VK7|1|A|G|2879
8VK7|1|A|U|2880
8VK7|1|A|A|2881
8VK7|1|A|C|2882
*
8VK7|1|A|G|2887
8VK7|1|A|G|2888
8VK7|1|A|A|2889
8VK7|1|A|C|2890
8VK7|1|A|C|2891
8VK7|1|A|G|2892

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6