IL_8VKV_012

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8VKV|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_012 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1297

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8VKV|1|D|G|147
8VKV|1|D|G|148
8VKV|1|D|A|149
8VKV|1|D|U|150
8VKV|1|D|A|151
8VKV|1|D|A|152
8VKV|1|D|C|153
*
8VKV|1|D|G|168
8VKV|1|D|C|169
8VKV|1|D|U|170
8VKV|1|D|A|171
8VKV|1|D|A|172
8VKV|1|D|U|173
8VKV|1|D|A|174
8VKV|1|D|C|175

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20