IL_8VKV_036

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_036 not in the Motif Atlas

Geometric match to IL_5J7L_038

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8VKV|1|D|G|887
8VKV|1|D|G|888
8VKV|1|D|A|889
8VKV|1|D|G|890
8VKV|1|D|U|891
8VKV|1|D|A|892
8VKV|1|D|C|893
8VKV|1|D|G|894
*
8VKV|1|D|U|905
8VKV|1|D|A|906
8VKV|1|D|A|907
8VKV|1|D|A|908
8VKV|1|D|A|909
8VKV|1|D|C|910

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12