IL_8VKV_068

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_068 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0696

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VKV|1|a|C|239
8VKV|1|a|C|240
8VKV|1|a|A|241
8VKV|1|a|G|242
8VKV|1|a|U|243
8VKV|1|a|A|244
8VKV|1|a|G|245
*
8VKV|1|a|C|253
8VKV|1|a|G|254
8VKV|1|a|A|255
8VKV|1|a|A|256
8VKV|1|a|C|257
8VKV|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15