IL_8VKV_094
3D structure
- PDB id
- 8VKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8VKV|1|a|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKV_094 not in the Motif Atlas
- Geometric match to IL_4WF9_036
- Geometric discrepancy: 0.0579
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8VKV|1|a|C|998
8VKV|1|a|U|999
8VKV|1|a|A|1000
8VKV|1|a|A|1001
8VKV|1|a|G|1002
*
8VKV|1|a|C|1153
8VKV|1|a|G|1154
8VKV|1|a|A|1155
8VKV|1|a|A|1156
8VKV|1|a|G|1157
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Ribosomal protein L21
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L30
- Chain z
- 50S ribosomal protein L20
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