IL_8VKV_120

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_120 not in the Motif Atlas

Geometric match to IL_5J7L_300

Geometric discrepancy: 0.1739

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VKV|1|a|U|1474
8VKV|1|a|G|1475
8VKV|1|a|U|1476
8VKV|1|a|A|1477
8VKV|1|a|G|1478
*
8VKV|1|a|U|1513
8VKV|1|a|G|1514
8VKV|1|a|A|1515
8VKV|1|a|G|1516
8VKV|1|a|G|1517

Current chains

Chain a

23S rRNA

Nearby chains