IL_8VKV_131

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_131 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1122

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8VKV|1|a|U|1720
8VKV|1|a|G|1721
8VKV|1|a|A|1722
8VKV|1|a|G|1723
8VKV|1|a|G|1724
*
8VKV|1|a|U|1736
8VKV|1|a|G|1737
8VKV|1|a|G|1738
8VKV|1|a|A|1739
8VKV|1|a|G|1740

Current chains

Chain a

23S rRNA

Nearby chains