IL_8VKV_137

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VKV_137 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.0691

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8VKV|1|a|U|1851
8VKV|1|a|U|1852
8VKV|1|a|A|1853
8VKV|1|a|A|1854
8VKV|1|a|U|1855
8VKV|1|a|U|1856
8VKV|1|a|G|1857
8VKV|1|a|A|1858
8VKV|1|a|U|1859
8VKV|1|a|G|1860
*
8VKV|1|a|U|1882
8VKV|1|a|U|1883
8VKV|1|a|G|1884
8VKV|1|a|A|1885
8VKV|1|a|U|1886
8VKV|1|a|C|1887
8VKV|1|a|G|1888
8VKV|1|a|A|1889
8VKV|1|a|A|1890
8VKV|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA