IL_8VKW_024
3D structure
- PDB id
- 8VKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- GUGAAGC*GUGGAGGC
- Length
- 15 nucleotides
- Bulged bases
- 8VKW|1|A|G|844
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VKW_024 not in the Motif Atlas
- Geometric match to IL_7A0S_001
- Geometric discrepancy: 0.2844
- The information below is about IL_7A0S_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VKW|1|A|G|817
8VKW|1|A|U|818
8VKW|1|A|G|819
8VKW|1|A|A|820
8VKW|1|A|A|821
8VKW|1|A|G|822
8VKW|1|A|C|823
*
8VKW|1|A|G|838
8VKW|1|A|U|839
8VKW|1|A|G|840
8VKW|1|A|G|841
8VKW|1|A|A|842
8VKW|1|A|G|843
8VKW|1|A|G|844
8VKW|1|A|C|845
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
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