IL_8VL1_053

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

8VL1|1|D|A|1257, 8VL1|1|D|A|1280, 8VL1|1|D|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_053 not in the Motif Atlas

Geometric match to IL_5J7L_055

Geometric discrepancy: 0.1308

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8VL1|1|D|G|1255
8VL1|1|D|A|1256
8VL1|1|D|A|1257
8VL1|1|D|G|1258
*
8VL1|1|D|C|1277
8VL1|1|D|G|1278
8VL1|1|D|G|1279
8VL1|1|D|A|1280
8VL1|1|D|C|1281
8VL1|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14