IL_8VL1_056

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8VL1|1|D|C|1400, 8VL1|1|D|A|1503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VL1_056 not in the Motif Atlas

Geometric match to IL_8CRE_466

Geometric discrepancy: 0.0603

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8VL1|1|D|C|1399
8VL1|1|D|C|1400
8VL1|1|D|G|1401
*
8VL1|1|D|C|1501
8VL1|1|D|A|1502
8VL1|1|D|A|1503
8VL1|1|D|G|1504

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 36 nt long spacer

Chain B

Transfer RNA; tRNA

Chain O

30S ribosomal protein S9