IL_8VMA_009
3D structure
- PDB id
- 8VMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of rhinovirus C15 RNA replication element sD-loop mutant in complex with Fab BL3-6
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.54 Å
Loop
- Sequence
- CUCCU*ACUUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VMA_009 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.1807
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8VMA|1|R|C|51
8VMA|1|R|U|52
8VMA|1|R|C|53
8VMA|1|R|C|54
8VMA|1|R|U|55
*
8VMA|1|R|A|71
8VMA|1|R|C|72
8VMA|1|R|U|73
8VMA|1|R|U|74
8VMA|1|R|G|75
Current chains
- Chain R
- RNA (88-MER)
Nearby chains
- Chain B
- Light Chain of Fab BL3-6
Coloring options: