IL_8VOO_133

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8VOO|1|a|A|1801, 8VOO|1|a|C|1816, 8VOO|1|a|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOO_133 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0828

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8VOO|1|a|U|1798
8VOO|1|a|G|1799
8VOO|1|a|C|1800
8VOO|1|a|A|1801
8VOO|1|a|A|1802
8VOO|1|a|A|1803
8VOO|1|a|C|1804
*
8VOO|1|a|G|1813
8VOO|1|a|G|1814
8VOO|1|a|A|1815
8VOO|1|a|C|1816
8VOO|1|a|G|1817
8VOO|1|a|U|1818
8VOO|1|a|A|1819
8VOO|1|a|U|1820
8VOO|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2