IL_8VOP_012

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8VOP|1|D|U|244, 8VOP|1|D|C|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VOP_012 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.0755

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8VOP|1|D|G|242
8VOP|1|D|A|243
8VOP|1|D|U|244
8VOP|1|D|U|245
8VOP|1|D|A|246
8VOP|1|D|G|247
*
8VOP|1|D|C|277
8VOP|1|D|G|278
8VOP|1|D|A|279
8VOP|1|D|C|280
8VOP|1|D|G|281
8VOP|1|D|A|282
8VOP|1|D|U|283
8VOP|1|D|C|284

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain V

30S ribosomal protein S17